Sunday 5 August 2012



Being able to visualize my manuscripts of papers has always intrigued me I am a very visual person and I am therefore naturally drawn towards visual aids when trying to understand thing.
The idea of visualizing a paper through the links the references make has for some time been an idea I have mulled on. It is only recently I have had the time to get to know the network visualizing software Gephi and see if this tool could be used for the purpose. The results you see below are the fruit of about 2-3 hours work. It is a small paper with 26 references and I have not included cross referencing between the individual references, but this is definitely a next step.

There are some quite obvious observations that can be made such as the largest bulk of the references appearing in the introduction (node marked I) and the Discussion (node marked D). What is surprising to me is that I have always thought I had a bigger bridge between the Introduction and the Discussion. What the graph it shows is that I do not reuse the references that I have introduced in the introduction. Whether this is good I do not know but it is definitely a sign that I have tried to remove redundant referencing by extending the information given in the introduction rather than repeating it in the discussion.

Overall I am quite pleased with the result, and it has given me the first ideas to what I need to do to perfect this visualization.

1.     I have to find a uniform setting that will allow me to visualize my papers under the same constraints. This will let me compare different papers directly.
2.     The links between the individual references, although adding a sizeable amount of work gives an important insight into whether the references used are redundant, fillers or overused.

I am looking forward to trying this on some of my larger papers. I might re post with a more extended analysis of this paper.

Thursday 2 August 2012

Graphical representation

I hope to finish my indexting and tagging of my literature soon so I can try and make a graphical illustration of my literature..

Comment

Besides my own publications (see right side of page) I hope to get all my litterature indexed and taged so that I can show a graphic representation of my litterature use and consumption as a researcher I hope to learn and use gephi (http://gephi.org/) for this. For a preview of what I hope to do (not entirely the same but close) check out this video.

For a list of my current literature check out my Mendeley profile.

My publications

Dupont S., 2012. Kauri seeds and larval somerssults: The larval trunk of the seed mining basal moth Agathiphaga vitensis (Lepidoptera: Agathiphagidae). Journal of Morphology

Dupont S., 2010. Insekternes exoskelet og øjnenes lysfangende design. Dyr og museum. 2:10-13

Dupont S., Pape T., 2009. A Review of Termitophilous and other Termite-Associated Scuttle Flies Worldwide (Diptera: Phoridae) Terrestrial Arthropod Reviews. 2(1): 3-40.

Disney R. H. L, Dupont S., 2009. New Genus of Scuttle Fly (Diptera: Phoridae) from a Termite Nest (Isoptera: Termitidae) in Laos. Sociobiology. 50:45-50

Dupont S., 2007. Pukkelfluer I termitboers svampehaver. Dyr og nature museum. 2: 22-25

Dupont S, Pape T., 2007. Fore Tarsus Attachment Device of the Male Scuttle Fly, Aenigmatias